Carini_etal_JEZB_oyster_larvae

Supporting datasets and R scripts for Carini et al. 2026Excel datasets: Larval shell length, larval shell thickness, field pH.R scripts: chromatograms.R= create TIC chromatograms, create_expr_objects.R= create MSnSet objects, larval_differences.R= all analyses other than proteomics, MSNID_filter.R= filtering protein identifications, prot_expr_analysis.R= differential protein expression analysis.Fasta files: treatment_proteome.fa= full sequences of filtered treatment shell proteome, control_proteome.fa= full sequences of filtered control shell proteomeFurther details regarding the datasets can be found in the readme file.