Illumina data

Datasets describing community composition of EcoPlate wells inoculated with lake water analyzed by 16S rRNA gene sequencing by LGC Genomics GmbH (LGC BiosearchTM Technologies, Teddington, UK, Sequencing service in Berlin, Germany) with Illumina MiSeq. ASVs were assembled with the UNOISE pipeline (Edgar, R. C. 2016. BioRxiv:081257) and the ASV table was constructed as described for OTU tables by Le Moigne, Alizee (2022). Pipeline UPARSE. figshare. Software. https://doi.org/10.6084/m9.figshare.21534099.v1. Here we provide ASV and taxonomy table and ASVs_Illumina lists the sequences of the ASVs. 180 samples were sequenced, grown on three different substrates (D-cellobiose, L-serine, N-acetyl-D-glucosamine) inoculated with either syringe or mixed samples from the three sampling campaigns, respectively (n = 10). More information about the sampling conditions can be found in the project description.Sample_info provides information for the sample names given in the ASV table. Information is formated as sampling_substrate_type. Values: Sampling = 1/2/3, substrate = cell/ser/nad, type = syr/mix.For example, 1_cell_syr describes a community inoculated with lake water from a sampling 1 syringe sample grown in D-cellobiose.