Additional file 1 of Integrative pigGTEx resource with GWAS reveals genetic mechanism underlying semen quality in boars
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https://springernature.figshare.com/articles/dataset/Additional_file_1_of_Integrative_pigGTEx_resource_with_GWAS_reveals_genetic_mechanism_underlying_semen_quality_in_boars/29606848/1
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Additional file 1: Table S1. Descriptive statistics, heritability, and repeatability estimates for 11 semen traits in duroc boars. Table S2. The lambda for 11 semen traits. Table S3. The independent variants for 11 semen traits through GCTA-COJO conditional analysis. Table S4. The summary statistics for validation population in Duroc boars. Table S5. The significant enrichment analysis of gene ontology for 11 semen traits. Table S6. The significant enrichment analysis of KEGG pathway for 11 semen traits. Table S7. The significant colocalization genes with PP4 > 0.9 in SPDCD. Table S8. Significant colocalization genes with PP4 > 0.9 in SPPMOT. Table S9. Significant colocalization genes with PP4 > 0.9 in SPTACOIL. Table S10. The PheWAS analysis of rs341819301. Table S11. The significantly associated gene list from gene-based association analysis in SPMOT. Table S12. The significantly associated gene list from single-tissue TWAS analysis in SPMOT. Table S13. Significant colocalization genes with PP4 > 0.9 in SPMOT. Table S14. The PheWAS analysis of rs322211455.
提供机构：
Shang, Xiuguo; Zhu, Lin; Zhao, Yunxiang; Li, Xuehua; Lin, Qing; Xia, Panjie; Li, Zhili; Rao, Kai; Zhuang, Zhanwei; Zhang, Zhe
创建时间：
2025-07-21
