Supporting data for "A single cell RNAseq benchmark experiment embedding "controlled" cancer heterogeneity" manuscript.

A dataset made of 500 cell for each of the 7 cell lines described in GSE243665 was generate using the Shiny App available at http://130.192.212.153:3838/.The dataset was annotated using Homo_sapiens.GRCh38.110.gtf (annotated_BE1500.csv) and clustered using the rCASC function scannoByGtf #clustering (BE1-500/Results/annotated_BE1500/6 folder) is performed using seurat Lovain modularity method, embedded in the rCASC package (Alessandri et al. Gigascience. 2019, PMID: 31494672)command.R describes all the analysis steps.BE1_log2TPM.txt.zip was generated using the data available at https://doi.org/https://doi.org/10.6084/m9.figshare.23284748.v1The comparison with Tian 2019 dataset requires the data available at https://doi.org/10.6084/m9.figshare.23274413.v1The comparison with PC9 scRNA-seq data requires the data available at https://doi.org/10.6084/m9.figshare.23626407.v1