<b>Genome-wide association analysis reveals single nucleotide polymorphism loci and candidate genes significantly associated with egg production traits in Pekin ducks</b>
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To ensure data quality, we employed quality control using VCFtools (--min-alleles 2, --max-alleles 2) (v0.1.16) (Danecek et al. 2011) and PLINK (--geno 0.05 --maf 0.01 --mind 0.05) (v 1.90) (Purcell et al. 2007). After quality control, 581 individuals and 1,111,649 SNPs were used for GWAS analysis. The file of "581s_QC.vcf.gz" contains information of 1,111,649 SNPs after quality control, which are used for association analysis.
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Zhou, Jun创建时间：
2024-01-16
