MMIST tutorial imaging and sequencing data
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Imaging and sequencing dataset of MCF10A cells responding to ligand treatments, accompanies jupyter-notebook based tutorial using the celltraj software package. Dataset includes live-cell imaging (48 hr duration, 20min intervals), segmentation masks (nuclear and voronoi partitions based upon nuclear centers), single-cell featurization and analysis data, and paired bulk RNA-sequencing data at 24 hours, see: Copperman, Jeremy, Ian C. Mclean, Sean M. Gross, Young Hwan Chang, Daniel M. Zuckerman, and Laura M. Heiser. "Single-cell morphodynamical trajectories enable prediction of gene expression accompanying cell state change." bioRxiv (2024): 2024-01.
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Zenodo创建时间:
2025-12-02



