Additional file 1 of Transductive learning as an alternative to translation initiation site identification

SVM parameters obtained by executing the Grid Search method Due to the high amount of available molecules (around 20 thousand) for the remaining analyzed organisms and the Grid Search’s high runtime (given by the SVM’s execution time and the amount of records in the training set), we use 10% of the available sequences. Those sequences were chosen using the Mersenne Twister method, but keeping the ratio of positive (TIS) and negative (nTIS) classes. Grid Search was executed for each of the organisms and window size defined in this work. This table presents the values for the parameters (C,γ) found by the Grid Search using RBF kernel function, which were used for the training of ISVM and TSVM. (XLS 28.0 kb)