Additional file 1 of Transcriptional analysis reveals specific niche factors and response to environmental stresses of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents

Additional file 1: Additional Tables (xlsx). Table S1: E. coli O157:H7 strain EDL933 up-regulated stress-responsive genes (RNA-seq data), Table S2: Down-regulated stress responsive genes, Table S3: Up and down-regulated genes associated with iron uptake or utilization, Table S4: Up-regulated genes associated with chemotaxis and flagella synthesis/motility, Table S5: Expression of LEE-encoding genes, Table S6: Expression of genes encoding proteins involved in distant adhesion of the bacteria, Table S7: p-values of one way ANOVA followed by Tuckey test for comparing transcription of TA systems in the three digestive contents, Table S8: Quantification of expression (Log2FC) of selected genes in EDL933 incubated in rumen, small intestine and rectum contents relative to M9-Glc by RT-qPCR and comparison with RNA-seq data, Table S9: Composition of the concentrate fed to the bulls, TableS10: EDL933 cell counts in the incubation media, Table S11: Primers used for qPCR.