Additional file 9 of Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity

Additional file 9. Phenotypes table. Document phenotypes.txt downloaded from the ResFinder repository ( https://bitbucket.org/genomicepidemiology/resfinder_db/src/master/ ) and manually curated in order to modify the class variable, grouping those genes that confer resistance to macrolides, lincosamides, streptogramins and pleuromutilins into the MLSP class, and those that confer resistance to oxazolidinones into the oxazolidinone class. This last group included cfr genes, which confer resistance to phenicols, lincosamides, oxazolidinones, pleuromutilins and streptogramins, the optrA gene, which confers resistance to phenicols and oxazolidinones, and the poxtA gene, which confers resistance to phenicols, oxazolidinones and tetracyclines.