Reference data bundle for CoLoRSdb

Static input files to support alignment, quality control, variant calling, and ancestry estimation using the GRCh38 and CHM13 references in the CoLoRSdb workflow. https://github.com/juniper-lake/CoLoRSdb https://colorsdb.org/ colorsdb_resources/ ├── CHM13 │ ├── human_chm13v2.0_maskedY_rCRS.fasta │ ├── human_chm13v2.0_maskedY_rCRS.fasta.fai │ ├── human_chm13v2.0_maskedY_rCRS.trf.bed │ ├── somalier.sites.chm13v2.T2T.vcf.gz │ └── vcfparser.CHM13.ploidy.txt └── GRCh38 ├── hificnv.cnv.excluded_regions.hg38.bed.gz ├── hificnv.cnv.excluded_regions.hg38.bed.gz.tbi ├── hificnv.female_expected_cn.hg38.bed ├── hificnv.male_expected_cn.hg38.bed ├── human_GRCh38_no_alt_analysis_set.fasta ├── human_GRCh38_no_alt_analysis_set.fasta.fai ├── human_GRCh38_no_alt_analysis_set.trf.bed ├── peddy.GRCH38.sites ├── peddy.GRCH38.sites.bin.gz ├── somalier.sites.hg38.vcf.gz ├── trgt.adotto_repeats.hg38.bed ├── trgt.pathogenic_repeats.hg38.bed ├── trgt.repeat_catalog.hg38.bed └── vcfparser.GRCh38.ploidy.txt 2 directories, 19 files