Statistical analysis of data determining minimal selective concentration of Amoxicillin, doxycycline and enrofloxacin
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下载链接：
https://zenodo.org/record/10709125
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资源简介：
This repository is containing the datasets with statistical analysis of the paper: "Selection for amoxicillin, doxycycline and enrofloxacin resistant Escherichia coli at concentrations lower tha nthe ECOFF in rich media and in broiler-derived fecal fermenations."
The phenotypic analysis
Phenotypic amoxicillin
R-file: Phenotypic Amox mixed models, CSV-file: Phenotypic data Amox
Phenotypic doxycycline
R-file: Phenotypic Dox mixed models, CSV-file: Phenotypic data Dox
Phenotypic enrofloxacin
R-file: Phenotypic Enro mixed models, CSV-file: Phenotypic data Enro
The resistome analysis
two CSV-files: Resistoom workfile and resistome_reference_file
one R-file: Resistome_analysis_antimicrobial_classes
Microbiome analysis
Alpha- and beta-diversity analysis
R-file Biom analysis, CSV-file: metadata2, biom-file: reads_fermentation
Microbial abundance analysis
R-file: Abundance plot, CSV-file: metadata2. biom-file: reads_fermentation2.biom
创建时间：
2024-04-02
