Additional file 1 of Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads

Additional file 1. Example configuration file with default values. For the configuration of sub-workflows and applications used by Natrix, a single configuration file is used. Optional parts of the workflow (e.g., the generation of quality reports, clustering of OTUs, or the assignment of taxonomic information) can be disabled. The configuration file is also used to define the protocols used to generate the input data, e.g., whether the data is in single-end or paired-end format and whether a split-sample approach was used during sample preparation. It also contains configuration options to adjust individual parts of the workflow depending on the requirements of the project. An example configuration file with a description and default value for each parameter is shown in the CSV file.