(Tm3-Cis) Simulation Cer160_9_Popc_512_Tm3_10_5Up_5Down_Nacl_150Mm_310K (Rep3)

System description<br> -------------------<br> - Title: (TM3-CIS) Simulation CER160_9_POPC_512_TM3_10_5up_5down_NaCl_150mM_310K (rep3) - Description: Simulation intake nine ceramides (CER16) to a POPC membrane containing ten LAPTM4B-TM3 peptides using charmm36 at 310K. (TM3 peptides have cis peptides bonds by mistake) - MD engine: gromacs 5.1.2 - Force field: charmm36 - Temperature: 310K - Simulation time: 5000ns - Saving frequency: 100ps - Molecular content:<br> TM3 10<br> POPC 512<br> CER160 9<br> SOL 34248<br> NA 102<br> CL 92 - Other information:<br> * Simulations containing 9 CER16 in the water phase initially.<br> * Membrane containing LAPTM4B TM3 peptides. - Problems<br> * By mistake some peptides bonds in TM3 are in CIS configuration