Supplementary Data - Signature Genetic Changes in the DNA Packaging Motor of Gene Transfer Agents

ADE85428_1_AlphaFold_prediction.zip: AlphaFold prediction of RcGTA TerL (ADE85428.1) protein strucutre using the simplified Colab impliementation of AlphaFold. substitution_scripts.zip: scripts used to prepare for and run support vector classifier on the codeml identified substitution sites. indel_scripts.zip: scripts used to prepare for an run support vector classifier on sliding windows of TerL alignment and identify informative indel events. 151_terL_tree.zip: contains large png of Figure 5 as well as a list of all 151 accessions included in that tree and a list of the 84 accessions considered to be RcGTA-like. codeml_outputs.zip: contains 5 rst files and 5 results files from the 5 separate codeml runs.