cephalotes_example_analysis

DIRECTORY: ./cephalotes_example_analysis This contains the denoised sequence data used in the analysis of Cephalotes ant gut microbiota (./cephalotes_example_analysis/seqs.fna), metadata mapping info (cephalotes_map.txt), host trees with individual samples (ceph_guide_tree.tre) and colonies (ceph_species_tree_SpeciesColony.tre) as leaves, and an example analysis script (cephalotes_script_example). It also contains example output from four different OTU clustering thresholds (./cephalotes_example_analysis/93, 95, 97, and 99), results from the beta diversity sensitivity analysis (./cephalotes_example_analysis/bdiv_sensitivity_grids), and the results of the compute_core_microbiome.py script in Qiime 1.6.0 (./cephalotes_example_analysis/core_otus).