Read counts and analyses for datasets from wild type and gefE- cells grown in G+ and G- media

Raw reads were processed as described in the methods and read counts for two biological replicates per condition can be found in Worksheet 1. Normalised read counts (Worksheet 2) were then used to identify 356 and 51 differentially expressed genes between AX3 G+ and AX3 G- (worksheet 3) and AX3 G+ and gefE- G+ (worksheet 4), respectively. Enriched GO terms for genes up-regulated in AX3 G+ or AX3 G- can be found in worksheets 5 and 6. No GO term enrichment was detected in the DEGs between AX3 G+ and gefE- G+.