Read counts and analyses for datasets from wild type and gefE- cells grown in G+ and G- media

Raw reads were processed as described in the methods and read counts for two biological replicates per condition can be found in Worksheet 1. Normalised read counts (Worksheet 2) were then used to identify 356 and 51 differentially expressed genes between AX3 G+ and AX3 G- (worksheet 3) and AX3 G+ and gefE- G+ (worksheet 4), respectively. Enriched GO terms for genes up-regulated in AX3 G+ or AX3 G- can be found in worksheets 5 and 6. No GO term enrichment was detected in the DEGs between AX3 G+ and gefE- G+.原始测序读数（Raw reads）按照方法部分所述流程完成处理，各实验条件下两个生物学重复的读段计数结果可在工作表1（Worksheet 1）中查阅。随后以标准化读段计数（Normalised read counts，工作表2）为数据基础，分别鉴定得到AX3 G+与AX3 G-、AX3 G+与gefE- G+之间的差异表达基因356个和51个，相关结果分别见于工作表3（Worksheet 3）与工作表4（Worksheet 4）。AX3 G+或AX3 G-中上调基因的富集基因本体（Gene Ontology，GO）条目可在工作表5与工作表6中获取。AX3 G+与gefE- G+之间的差异表达基因未检测到GO富集条目。