Data for `Theory of Infectious Diseases with Testing and Testing-less Covid-19 Endemic' by B.Deng and C.Y. Yang

All mfiles starting with 'Run_*' can be run on Matlab without any pre-loaded variables or data. The three files in the root directory consist of the only input data to all program mfiles for three of the four folders: Build_Real_Data, Build_Solution_Book, Plot_Output. Of which, SICM.m is the mathematical model, Input_Matched_InitialsAndParameters.mat contains initial conditions and parameter values for each day from day 50 to day 590, 30 best-fitted values for each day, ranking from the best to worst fit. The third csv file is the US cases and deaths data from CDC. The order in which to generate the output data files is to run all Run_* mfiles in folders (1) Build_Real_Data (2) Build_Solution_Book (3) Plot_Output To save memory space, Solution_Sheet.mat is not included in the shared data. It needs to be generated in Build_Solution_Book before plots in Plot_Output can be done. When you reach the Plot_Output folder, you have build all data files to generate the fig_best_match, and the testing-free equilibrium E_1 and the interior endemic equilibrium E_* for the best-fitted model. Files in folder 'Variant Typing' is independent and is for varients of Covid-19. Data file 'Publication_Data' contains parameters and ininitials for 5 variants from day 50 to day 590. 'Publication_Data_Classification' contains classification of the variants parameters into types according to Theorem 1.1 and Theorem 1.2 of the manuscript. For example, T113 is for the type defined by parameter condition 3 of Theorem 1.1, and T123 is for Theorem 1.2's parameter type 3. All figures for the manuscript, 'Theory of Infectious Diseases with Testing and Testing-less Covid-19 Endemic' by B.Deng and CY. Yang are located in the root directory. Note: It requires zero knowledge to verify the result. All one needs is the model SICM.m (or SICMRD.m) and the initial values and parameters provided in the root folder and in the `Variant Typing' folder. Dr. B. Deng Univ. of Nebraska-Lincoln USA All rights preserved. June 2023.