GDC-SM is a schema matching evaluation benchmark based on a real data harmonization scenario that is common in biomedical research: pooling datasets from multiple studies to increase the number of pat
R scripts for generating profiles from single cell data from CellProfiler deposited into an MySQL database and for generating plots from per-treatment profiles. Contains CellProfiler pipelines for a
Dataset associated with: Adrien Hallou, Ruiyang He, Benjamin David Simons and Bianca Dumitrascu. A computational pipeline for spatial mechano-transcriptomics. bioRxiv 2023.08.03.551894; doi: https://