PnPf2 ChIP-seq regulation data.

Tab 1) A spreadsheet detailing the genomic coordinates for ChIP-seq peak regions [columns A-C], the respective summit loci [D], the summit -Log10(Q-values) measuring the relative difference of ChIP reads to input controls [E], the nearest adjacent gene transcription start sites, strand and the respective distances [F-H]. Data for the Pf2-HA strain span columns A-H and the Pf2-HA_OE strain column I-P. Genomic coordinates of merged peaks from both datasets using MAnorm [67] are shown in columns Q-T. Tab 2) A spreadsheet summarising PnPf2 regulation data across the P. nodorum SN15 genome for the respective annotated genes [column A]. Listed are whether ChIP-seq promoter summits were called from the Pf2-HA and Pf2-HA_OE samples [B-C], whether the enriched PnPf2 target motifs [D-E] or the putative PnCreA motif [G] were present in the gene promoter regions, and whether the gene was also down/up-regulated in the pf2ko mutant (in vitro or in planta) [G-J]. Also listed are the functional annotations [K-P]; whether the gene was classed as effector-like [K], a TF [L], and the associated GO/Interpro domain information [M-P]. The final columns list the respective gene expression data for pf2ko compared with SN15 either in vitro (iv) or in planta (ip) [O-W]. *Information indicated was derived from [13] for comparative purposes. **Predicted effectors derived from [32].
(XLSX)