Additional file 2: of Deciphering alternative splicing and nonsense-mediated decay modulate expression in primary lymphoid tissues of birds infected with avian pathogenic E. coli (APEC)

Table S1. Significant DEI and DEG in susceptible vs. non-challenged birds at 5 dpi in bone marrow. Table S2. Significant DEI and DEG in susceptible vs. non-challenged birds at 5 dpi in bursa. Table S3. Significant DEI and DEG in susceptible vs. non-challenged birds at 5 dpi in thymus. Table S4. DEG from the same TSS in susceptible vs. non-challenged birds at 5 dpi in bone marrow. Table S5. DEG from the same TSS in susceptible vs. non-challenged birds at 5 dpi in bursa. Table S6. DEG from the same TSS in susceptible vs. non-challenged birds at 5 dpi in thymus. Table S7. DEG from different TSS in susceptible vs. non-challenged birds at 5 dpi in bone marrow. Table S8. DEG from different TSS in susceptible vs. non-challenged birds at 5 dpi in bursa. Table S9. DEG from different TSS in susceptible vs. non-challenged birds at 5 dpi in thymus. Table S10. Significant DEI and DEG in susceptible vs. resistant birds at 5 dpi in bone marrow. Table S11. Significant DEI and DEG in susceptible vs. resistant birds at 5 dpi in bursa. Table S12. Significant DEI and DEG in susceptible vs. resistant birds at 5 dpi in thymus. Table S13. DEG from the same TSS in susceptible vs. resistant birds at 5 dpi in bone marrow. Table S14. DEG from the same TSS in susceptible vs. resistant birds at 5 dpi in thymus. Table S15. DEG from different TSS in susceptible vs. resistant birds at 5 dpi in bone marrow. Table S16. DEG from different TSS in susceptible vs. resistant birds at 5 dpi in bursa. Table S17. DEG from different TSS in susceptible vs. resistant birds at 5 dpi in thymus. Table S18. Significant DEI in the significantly changed pathways in different contrasts in different tissues. (XLSX 904 kb)