遇见数据集

perturbMatch reference perturbation expression signatures

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Zenodo2026-08-04 更新2026-08-13 收录
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Reference gene expression signatures from single-gene perturbation (knockdown, knockout, overexpression) RNA-seq experiments in GEO, used by the perturbMatch R package to rank the perturbations whose expression response most resembles a query signature. These files are the hosted back end of the Bioconductor ExperimentHub package perturbMatchData and are not intended for direct download. Use perturbMatchData::perturbMatch_chrdir() or perturbMatch::getReferenceDatabase(), which fetch and cache them for you. See README.md for the file format and a standalone rebuild snippet. Four datasets over the same 39,376 NCBI genes: chrdir (6,802 signatures), chrdir_sva (5,786), limma (6,802) and limma_sva (5,786).

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Zenodo
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2026-08-04
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