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Peakhood: individual site context extraction for CLIP-seq peak regions

NIAID Data Ecosystem2026-03-12 收录

CLIP-seq

RNA结合蛋白结合位点提取

数据链接：

https://zenodo.org/record/5140018 数据链接链接失效反馈

官方服务：

资源简介：

Peakhood Supplementary Data Archive, see content.txt for file content descriptions.

应用场景：

创建时间：

2021-10-09

RNA剪接调控

CLIP-seq

RBM39 is extensively involved in alternative splicing of RNA and helps regulate transcript levels. RBM39 may modulate alternative splicing similarly to U2AF65 by either directly binding to RNA or recr

NIAID Data Ecosystem100

Supplementary Table 3 - Msa1 peaks from mmi1 and rep2 mRNAs are novel RNA targets of the Mei2 RNA binding protein during early meiosis in Schizosaccharomyces pombe

CLIP-seq

生物信息学

Msa1 CLIP-Seq peaks determined by HOMER

Mendeley Data2024-06-29 更新60

Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs

miRNA靶点鉴定

CLIP-seq

MicroRNAs (miRNAs) are a large family of 19-22nt non-coding RNAs that post-transcriptionally regulate their mRNA targets. Computational algorithms predict that over half of all genes are regulated by

NIAID Data Ecosystem20

GoldCLIP: Gel-omitted Ligation-dependent CLIP

环状RNA-蛋白质相互作用

CLIP-seq

Protein-RNA interaction networks are essential to understand gene regulation control. Identifying the binding sites of RNA-binding proteins (RBPs) by CLIP (UV-crosslinking and immunoprecipitation) rep

NIAID Data Ecosystem70

ALKBH3 CLIP-seq in HeLa cells.. ALKBH3 CLIP-seq in HeLa cells.

RNA-蛋白质相互作用

CLIP-seq

The CLIP procedures were conducted using HeLa cells according to the previous study (Liu et al., 2016) with slight modifications. Briefly, 4 plates of HeLa cells in 15 cm dishes were transfected with

NIAID Data Ecosystem40

Peakhood: individual site context extraction for CLIP-seq peak regions

资源简介：

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