Additional file 1 of A deep learning strategy for accurate identification of purebred and hybrid pigs across SNP chips

Supplementary Material 1: Table S1 Hyperparameter grid search results. Table S2 Breed identification accuracies in five replicates of fivefold cross validation study in Population 1. Table S3 Breed identification accuracies in independent testing of using Population 1 to predict Population 2. Table S4 The prediction accuracies of all breeds at different determination threshold values for purebred. Table S5 The identification accuracies of hybrid at different number of hybrid individuals in training set. Table S6 Breed identification accuracies in independent testing of using Population 1 to predict Population 2 for XGBoost. Table S7 Distribution of the proportion of the breed with the highest proportion in the genomic breed composition of all hybrid individuals predicted by MLP.