Additional file 6: Table S6. of In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR

Genes of A. niger encoding pectinolytic enzymes and their expression in ΔlraA, ΔlraB, ΔlraC, ΔrhaR mutants and the reference strain after a 2 h transfer to L-rhamnose. The expression levels are mean values of duplicate samples. Genes with values higher than 120 are considered highly expressed and marked red. Genes with values lower than 20 are considered low expressed and marked green. The fold change is the difference in expression between the reference strain and the deletion mutants. The cutoff for differential expression is fold change >1.5 (cells marked red if upregulated and green if downregulated) and p-value <0.05 (cells marked yellow). HGA = homogalacturonic acid, XGA = xylogalacturonan, RG-I = Rhamnogalacturonan-I, SC = side chains. (XLSX 624 kb)