1_recombination_maps_csv_ZIP

Recombination map files for D. simulans and D. melanogaster, at different smoothing resolutions. We provide moving median and LOESS smoothed maps. For Dsim, the moving median files are provided at the following resolutions: 5, 25, 101, 501, and 2501 kb. For Dmel, the moving median files are provided at the following resolutions: 501, and 2501 kb, due to a lower resolution initial map. For Dsim the LOESS files are provided with the LOESS smoothing parameter set at the following levels: 0.001, 0.005, 0.02, 0.10. These levels are equivalent to moving median windows of 25, 101, 501, and 2501 kb. For Dmel, the LOESS smoothing parameter is set at: 0.02, 0.10. Finally, a raw unsmoothed recombination map is provided for Dsim, in 1 kb windows, and for Dmel at 101 kb. Details for how this raw Dsim map was produced are in our paper, Howie et et al. 2019. The R script used to produce differently smoothed recombination maps for both species is also provided as an R-Markdown file.