TerraDactyl v1.0 software archive

TerraDactyl allows for the extraction of map layer data, currently curated by Google Earth Engine (GEE), at a set of point in space and time. It has been developed in tandem with eDNAExplorer.org as a means of automatically associated biodiversity data, derived from environmental DNA, with environmental conditions associated with each sample. However, these extracted environmental data can be associated with other types of data collected, not just biodiversity measurements. Quick overview of this archive: 1. Example input file for TerraDactyl: TerraDactyl_ExampleInput.csv 2. Example output file from TerraDactyl: TerraDactyl_ExampleOutput.csv 3. Overview of environmental data sets utilized by TerraDactyl: TerraDactyl_Metadata.xlsx 4. Python requirements: requirements.txt 5. Script for processing environmental maps in raster format: RasterDataset.py 6. Script for processing environmental maps in vector format: VectorDataset.py 7. The TerraDactly script: terradactyl.py 8. Shell script for running terradactyl.py in parallel over input rows of metadata (These describe sample locations and dates).TerraDactyl 是一款可针对指定时空点提取目前由谷歌地球引擎（Google Earth Engine，GEE）精心整理的地图图层数据的工具。本工具与 eDNAExplorer.org 协同开发，旨在将源自环境 DNA（environmental DNA，eDNA）的生物多样性数据，自动关联至各样本对应的环境条件。不过，所提取的环境数据亦可与其他类型的采集数据进行关联，而非仅局限于生物多样性测量数据。 快速归档概览： 1. TerraDactyl 示例输入文件：TerraDactyl_ExampleInput.csv 2. TerraDactyl 示例输出文件：TerraDactyl_ExampleOutput.csv 3. TerraDactyl 所用环境数据集概览：TerraDactyl_Metadata.xlsx 4. Python 依赖配置文件：requirements.txt 5. 栅格格式环境地图处理脚本：RasterDataset.py 6. 矢量格式环境地图处理脚本：VectorDataset.py 7. TerraDactyl 主脚本：terradactyl.py 8. 用于并行运行 terradactyl.py 的 Shell 脚本（该脚本针对元数据的输入行进行并行处理，元数据描述了样本的采集位置与日期）。