Additional file 1 of Genome characteristics of clinical Salmonella enterica population from a state public health laboratory, New Hampshire, USA, 2017–2020

Additional file 1: Supplementary Table 1. Accession numbers, sampling information, MLST profiles and genome characteristics of the 394 S. enterica. Serotyping results by agglutination test and SeqSero2 that were not in concordance are highlighted in yellow. Supplementary Table 2. Pan-genome characteristics determined using Roary. Supplementary Table 3. Matrix of pairwise ANI values calculated using fastANI. Supplementary Table 4. Presence and absence of antimicrobial resistance genes per genome identified using ABRicate to query the Comprehensive Antibiotic Resistance Database. Supplementary Table 5. List of genes conferring resistance to multiple antimicrobials identified using ABRicate to query the Comprehensive Antibiotic Resistance Database. Supplementary Table 6. Strain names, accession numbers and associated metadata of 960 genomes from 17 other states in the United States. These genomes were obtained from the NCBI Pathogen Detection database.