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Individual marker gene and MLSA phylogenies

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DataCite Commons2020-08-27 更新2024-08-17 收录
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https://figshare.com/articles/Individual_marker_gene_and_MLSA_phylogenies/8332706/1
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CDS alignments and gene trees were extracted from the ‘41NeoPseudo’ Pantagruel database (Dataset https://doi.org/10.6084/m9.figshare.8320142) for the following genes atpD (gene family id: RHIZOC034665, OG id: 1), glnII (RHIZOC002590, 0), gyrB (RHIZOC002739, 0), recA (RHIZOC040013, 0) and rpoB (RHIZOC004093, 0). Note that R. marinum MGL06<sup>T</sup> sequence for glnII gene was missing in gene family RHIZOC002590, probably due to incomplete genome assembly. CDS alignments were concatenated and a tree was computed with MrBayes as described in Dataset https://doi.org/10.6084/m9.figshare.8320199.
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figshare
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2019-06-27
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