Assembled "juvenile head region" transcriptome from the hagfish Eptatretus burgeri (NCBI GenBank Accession: SRX2541845)
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下载链接：
https://zenodo.org/record/13341146
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资源简介：
1) The raw reads were dwonloaded from NCBI GenBank (SRA run accession: (SRR5234495) with sratoolkit.
2) The assembly was performed with Trinity with the folllowing parameters:
Trinity --seqType fq --max_memory 100G --left eb-hf-head-region-SRR5234495/eb-hf-head-region-SRR5234495_1.fastq --right eb-hf-head-region-SRR5234495/eb-hf-head-region-SRR5234495_1.fastq --CPU 10 --output trinity-transcriptome-eb/
3) ORFs were predeicted with TransDecoder with the following settings:
TransDecoder.LongOrfs -t transcriptome-eb-hf-head-region.fasta
TransDecoder.Predict -t transcriptome-eb-hf-head-region.fasta
创建时间：
2024-08-19
