Supplementary tables 1-11

Supplementary Table 1. The list of the closest 14 Listeria monocytogenes (Lm) homologs and the 11 reference Lm strains used for a phylogenetic analysis of the Lm strain AUF-2 and the Lm strain AUF-3 visualized in Figure 1.
Supplementary Table 2. The novel allele profiles of virulence genes recognized for the Listeria monocytogenes (Lm) strain AUF-2 and the Lm strain AUF-3, and two reference Lm strains, either the Lm strain UKVDL4 or the Lm strain FSL-J1-158, respectively, versus the NCBI reference, the Lm strain EGD-e.
Supplementary Table 3. MLST characteristics the Listeria monocytogenes (Lm) strain AUF-2, the Lm strain AUF-3 and the Lm reference strains of different origin, whose whole genomes are available in the NCBI GenBank (https://www.ncbi.nlm.nih.gov/). The identical alleles are colored in red.
Supplementary Table 4. Comparison of the L. monocytogenes (Lm) strain AUF-2 genome versus the Lm strain AUF-3 genome and eight Lm reference genomes. Comparative analysis of the whole genomes of the Lm AUF-2 versus nine Lm strains were done on the BV-BRC platform (https://www.bv–brc.org/).
Supplementary Table 5. Comparison of either the L. monocytogenes (Lm) strain AUF-2 genome or the Lm strain AUF-3 genome with the NCBI reference sequence the Lm strain EGD-e. Comparative analysis of these Lm whole genomes was done on the BV-BRC platform (https://www.bv–brc.org/).
Supplementary Table 6. Comparative differences between either the L. monocytogenes (Lm) strain AUF-2 or the Lm strain AUF-3 and other Lm reference strains of different origin. Comparison the number and allele profiles of genes/loci functionally annotated and associated with different Lm activity.
Supplementary Table 7. The list of pseudogenes annotated in the Listeria monocytogenes (Lm) AUF-2 compare with the panel of reference Lm strains.
Supplementary Table 8. The list of pseudogenes annotated in the Listeria monocytogenes (Lm) AUF-3 compare with the panel of reference Lm strains.
Supplementary Table 9. Polymorphism of the T7SS genes annotated in either Listeria monocytogenes (Lm) strain AUF-2 or the Lm strain AUF-3 vs the Lm strain EGD-e, the NCBI Reference Sequence (NZ_CP023861.1).
Supplementary Table 10. Comparative number of the genes capable to translate the proteins in the Listeria monocytogenes (Lm) strains AUF-2 and the Lm strain AUF-3 which were annotated as pseudogenes in the reference Lm strain EGD-e, the Lm strain FDAARGOS_607 and the Lm strain AUF.
Supplemental Table 11. Comparative number of the genes identified in either the Listeria monocytogenes (Lm) strain AUF-2 or the Lm strain AUF-3 involved in the Lm in acidic resistance.