Table S1. Sequencing and mapping statistic on the 90 shotgun sequenced Megaloceros giganteus;Table S2. Information on the Megaloceros giganteus samples that were used in the capture experiments and/or included in the phylogenetic analyses.;Table S3. Baits used in this study for the mitochondrial DNA capture experiment. from Exploring the phylogeography and population dynamics of the giant deer (<i>Megaloceros giganteus</i>) using Late Quaternary mitogenomes

Baits were designed by MYBaits based on the consensus sequences from Immel et al. 2015. The array contains 733 baits, with a length of 80mer probes with either and 4x (mito) flexible tiling density.