Open Reading Frames (ORFs) and annotations from the paired-end transcriptome outputs of Savalia savaglia's RNASeq data

This dataset contains Open Reading Frames (ORFs) and annotations obtained from the paired-end transcriptome outputs of Savalia savaglia's RNASeq data. The dataset includes the following files: From TransDecoder analyses: • Assembly_Ss_PE.Trinity.fasta.transdecoder.cds: Nucleotide sequences for coding regions of the final candidate ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq. • Assembly_Ss_PE.Trinity.fasta.transdecoder.gff3: Positions within the target transcripts of the final selected ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq. • Assembly_Ss_PE.Trinity.fasta.transdecoder.pep: Peptide sequences for the final candidate ORFs, obtained with TransDecoder from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq. • Assembly_Ss_PE.Trinity.fasta.transdecoder.bed: BED-formatted file describing ORF positions, suitable for viewing using GenomeView or IGV, obtained from paired-end transcriptome outputs of Savalia savaglia's RNA-Seq data. • blastp.outfmt6.w_pct_hit_length: File providing percentages of hit lengths from BLASTp results of the paired-end de novo assembly of Savalia savaglia. It includes the top hit's length and the percentage of the length covered in the alignment. • pfam.domtblout: PFAM domain annotations for the predicted proteins in the paired-end de novo assembly of Savalia savaglia. From Trinotate analyses: • myTrinotate_PE_Ss.tsv: Comprehensive annotation file with results from Trinotate, including protein domain identification and other annotations from the paired-end de novo assembly of Savalia savaglia. • Trinotate_PE_Ss_report.cXp_summary.html: HTML report summarizing the annotation results from Trinotate, providing an overview of the functional annotations and transcript features of the paired-end de novo assembly of Savalia savaglia.本数据集包含从萨瓦利亚珊瑚（Savalia savaglia）的RNA测序（RNA-Seq）双端转录组输出中获取的开放阅读框（Open Reading Frames, ORFs）及其注释信息。数据集包含以下文件： 来自TransDecoder分析的文件： • Assembly_Ss_PE.Trinity.fasta.transdecoder.cds：最终候选开放阅读框编码区的核苷酸序列，通过TransDecoder从萨瓦利亚珊瑚的RNA-Seq双端转录组输出中获取。 • Assembly_Ss_PE.Trinity.fasta.transdecoder.gff3：最终筛选出的开放阅读框在目标转录本上的位置信息，通过TransDecoder从萨瓦利亚珊瑚的RNA-Seq双端转录组输出中获取。 • Assembly_Ss_PE.Trinity.fasta.transdecoder.pep：最终候选开放阅读框的肽段序列，通过TransDecoder从萨瓦利亚珊瑚的RNA-Seq双端转录组输出中获取。 • Assembly_Ss_PE.Trinity.fasta.transdecoder.bed：采用BED格式的开放阅读框位置描述文件，适用于GenomeView或IGV进行可视化查看，数据源自萨瓦利亚珊瑚的RNA-Seq双端转录组输出。 • blastp.outfmt6.w_pct_hit_length：该文件提供了萨瓦利亚珊瑚双端从头组装结果的BLASTp比对结果中的匹配长度占比信息，包含最优匹配序列的长度以及比对覆盖的长度百分比。 • pfam.domtblout：针对萨瓦利亚珊瑚双端从头组装所得预测蛋白的PFAM结构域注释文件。 来自Trinotate分析的文件： • myTrinotate_PE_Ss.tsv：综合性注释文件，包含Trinotate分析结果，涵盖萨瓦利亚珊瑚双端从头组装所得的蛋白结构域识别结果及其他注释信息。 • Trinotate_PE_Ss_report.cXp_summary.html：Trinotate注释结果汇总HTML报告，可概览萨瓦利亚珊瑚双端从头组装的功能注释及转录本特征信息。