Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of isolated murine pancreatic islets (jrc_mus-pancreas-1)

Segmentation description: Nuclei segmentations in jrc_mus-pancreas-1 using Cellpose 3.0.9 with cursory manual corrections.Software: Cellpose 3.0.9Software DOI: https://doi.org/10.1038/s41592-022-01663-4Prediction Duration (seconds): 599.51GPU: NVIDIA TITAN RTXRAM: 251.0 GiBLabel voxel size (nm): 128 x 128 x 128 (x, y, z)Reconstructed data dimensions (µm): 30 x 20 x 25 (x, y, z)Classes annotated: NucleusSource dataset (EM) ID: jrc_mus-pancreas-1Source dataset (EM) voxel size (nm): 4.0 x 4.0 x 3.4 (x, y, z)Source dataset (EM) data dimensions (µm): 30 x 20 x 25 (x, y, z)Source dataset (EM) DOI: https://doi.org/10.25378/janelia.13114499Dataset URL: s3://janelia-cosem-datasets/jrc_mus-pancreas-1/jrc_mus-pancreas-1.zarr/recon-1/labels/inference/segmentations/nuc/Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-pancreas-1