Data and Analysis Files Repository: Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics
收藏Zenodo2024-10-29 更新2026-05-26 收录
下载链接：
https://zenodo.org/doi/10.5281/zenodo.10963424
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资源简介：
Data and Analysis Files from "Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics"
ArraySeq_Method.zip contains the following folder and contents:
STARSolo: All code and count matrix output from fastq spatial barcode demultiplexing.
Images: All resolution-downsampled H&E image scans from analyzed tissues
Space_Ranger: All 10x Space Ranger output from Visium datasets generated in the paper.
Analysis: All scripts for analyzing and plotting Array-seq and Visium datasets generated in this paper. Also contains output h5ad files.
ArraySeq_Barcode_generation_n12.rmd: The script used to generate the Array-seq probes with 12-mer spatial barcodes.
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Zenodo创建时间：
2024-10-29
