Additional file 1 of Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima

Additional file 1: Table S1. Phenotypic data used for genome-wide association analyses. Flowering time (DFT), rachis length (RL), primary branch number (PBN), primary branch average length (PBL), secondary branch average length (SBL), primary branch internode average length (PBintL), secondary branch number (SBN), secondary branch internode average length (SBintL) and spikelet number (SpN) were evaluated in field conditions in 2012 and 2014. Resistance to RYMV was evaluated in greenhouse conditions during three experiments (RYMV1, RYMV2, RYMV3) shifted of about 1–2 months. Environmental data were extracted from the worldclim database at available sampling locations. A Principal Component Analysis was then performed on i) the whole set of variables and ii) only maximal temperature related ones. The two first axes of both these PCA were then used for association analyses and are reported in this table. A Box-Cox transformation was applied to the different data set in order to approximate the normality. The “T_” prefix was added to variables names to distinguish non-transformed and transformed variables. (XLS 161 kb)