Raw microbial 16S rRNA sequence reads: genital tract samples of female mice with and without Chlamydia infection

To study whether the time of Chlamydia infection affects the genital tract microbiome, we sequenced the vaginal, uterine, and ovary and oviduct microbiota from female C57BL/6J mice with and without Chlamydia infection. The mice were infected with Chlamydia at either ZT3 or ZT15.