Support information for HiCDiff

Zenodo2023-11-29 更新2026-04-07 收录

Hi-C数据分析

染色体构象建模

数据链接：

https://zenodo.org/doi/10.5281/zenodo.10207781 数据链接链接失效反馈

官方服务：

资源简介：

The dataset contains all the raw data and processed data used in HiCDiff, is supplement to GitHub repository: https://github.com/BioinfoMachineLearning/hicdiff

创建时间：

2023-11-29

Additional file 3: Table S2. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

Hi-C数据分析

TAD拓扑关联结构域

HiC-bench input-output objects. The table summarizes the inputs and outputs of the TAD-calling task using three different methods with parameter values stored in the params files (column 2). The first

DataCite Commons2024-12-17 更新110

colon37_res200000_chr21_cond1_0.matrix

染色体构象捕获

Hi-C数据分析

matrix of 1st replicate, chr21, resolution 200kb

Recherche Data Gouv France2024-01-01 更新70

Identification of topologically associated domains (TADs) in peripheral blood CD34+ cells

造血干细胞三维基因组

Hi-C数据分析

We performed a Hi-C experiment on CD34+ cells isolated from peripheral blood and identifed topologically associated domains (TADs). Overall design: Two replicates of mobilized peripheral blood CD34+ c

NIAID Data Ecosystem40

Additional file 2: Table S1. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

基因组数据处理

Hi-C数据分析

HiC-bench task implementation. The table summarizes how the pipeline tasks are implemented, which are the requirements for their execution and how they are handled by the pipeline-master-explorer scri

NIAID Data Ecosystem80

Coolpup.py – a versatile tool to perform pile-up analysis of Hi-C data

Hi-C数据分析

染色质相互作用

Data used for the analysis and to generate the figures. After un-tar-ing, the data is present in three folders. /coolers contains Hi-C data in the .cool format, and associated text files. /beds contai

Mendeley Data2024-06-25 更新60

Support information for HiCDiff

资源简介：

相关数据集