DELPHI Fig 5 TCGA-BRCA downstream data cache

# Fig 5 TCGA-BRCA downstream data cache (~3.4 GB) Pre-computed downstream analysis results for DELPHI Fig 5 (TCGA-BRCA survival analysis). Enables figure reproduction without downloading ~2 TB of TCGA SVS whole-slide images. ## Contents ``` sec6_v2/ ├── spatial_features.csv 17 spatial features × ~1000 patients ├── univariate_cox_by_pam50.csv PAM50-stratified Cox results ├── multivariate_cox.json 3-feature L1-Cox model ├── annotations/ ~1000 per-patient niche annotations (.json) ├── niches_expression/ ~1000 per-patient expression niches (.npz) ├── niches_confidence/ ~1000 per-patient confidence niches (.npz) ├── inference/ 9 representative .pt files (~3 GB) ├── ablation_v2/V1-V4/ UQ-filter ablation results └── cohort_full_os.csv TCGA-BRCA clinical cohort ``` ## Usage 1. Download and extract into `results/sec6_v2/` 2. Run: `python scripts/figures/plot_fig5_main.py` 3. Output: `figures/main/fig5.png` ## Provenance Generated by the DELPHI survival pipeline: `scripts/survival/infer_brca_full.py` → `run_pipeline.py --once` → `plot_fig5_main.py` ## Citation See DELPHI paper.