Additional file 6: of Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages

Table S1. Related to Fig. 1. Summary of quantified phosphorylation sites over MS experiments with MQ and PD search engines. This table is provided in a separate Excel file (Additional file 1: Table S1). List of quantified phosphorylation sites over MS experiments (4 experimental conditions in total), containing details on which sites were quantified in which search engine (PD, MQ), the ratios in the 4 different conditions, field assignment (similar to [4]), the corresponding protein and whether an S/T-P motif has been found to be phosphorylated. The column “assignment_figure2” provides the underlying data for Fig. 2a, hence whether the corresponding phosphorylation site has been commonly quantified in PD and MQ, quantified in MQ only or quantified in PD only. The additional columns provide data on the quantified phosphorylation sites that have been published in [22] (salt stress at time points 0, 55″, 60″, regulatory clusters), [5] (salt stress at 5′) and [62] (salt stress upon Cdc28 inhibition) and integrated with the PD and MQ datasets. (XLSX 1765 kb)