Data Sets and Results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins"

Data sets and results for "Improved data sets and evaluation methods for the automatic prediction of DNA-binding proteins" The file "dna_binding_protein_sequences.zip" has the training and testing sets from the paper: RLL - "random__full_1000.csv" RSL - "random__40.csv" RS&LL - "random__40_1000.csv" RLL where included positive examples have verified DNA binding activity - "random__hq_1000.csv" The 10 RS&LL data sets - "random__40_1000.csv" + "random__40_1000_cv_<0-8>.csv" The results files are named similarly. See "see_results.ipynb" in the codebase that supplement these data sets The species data sets are derived from "uniprot_data_bac.tab" and "uniprot_data_not_bac.tab." See code. The ESM embeddings used by the XGBoost model are in "dna_binding_protein_esm.zip"