Linum trigynum - Tajima's D estimates per population
收藏figshare.scilifelab.se2024-10-30 更新2025-01-21 收录
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https://figshare.scilifelab.se/articles/dataset/_i_Linum_trigynum_i_-_Tajima_s_D_estimates_per_population/26937202/2
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资源简介:
Whole genome Tajima's D estimates for individuals of all population of L. trigynum per 100 kb windows.
It is part of this article: Gutiérrez-Valencia, J., Zervakis, P. I., Postel, Z., Fracassetti, M., Losvik, A., Mehrabi, S., ... & Slotte, T. (2024). Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum. Molecular Biology and Evolution, msae087. https://doi.org/10.1093/molbev/msae087
Estimations were done using vcftools v.0.1.16 on a filtered vcf file.
File's descriptions:
CHROM = the chromosome's name
START = the start position of the 100 kb window
END = the end position of the 100 kb window
TajimaD = the estimated value of Tajima's D for that window
List of the populations:
population 01
population 03
population 04
population 06
population 07
population 08
population 10
population 11
针对L. trigynum所有种群个体,以每100 kb窗口为单位的全基因组Tajima's D估计值。此数据集收录于Gutiérrez-Valencia等(2024)发表的文章《Linum trigynum异花授粉破裂的遗传原因和基因组后果》中。研究采用vcftools v.0.1.16版本在过滤后的vcf文件上进行了估计。
文件描述如下:
CHROM = 染色体名称
START = 100 kb窗口的起始位置
END = 100 kb窗口的终止位置
TajimaD = 该窗口的Tajima's D估计值
种群列表:
种群01
种群03
种群04
种群06
种群07
种群08
种群10
种群11
提供机构:
SciLifeLab



