Human data

This is a compressed dataset containing 4 files: 1) "raw_count_data_filtered.txt" (1.3GB): raw read counts of genes in 8,796 human bulk RNA-seq samples. 2) "logCombat_UQ_log10.txt" (5.1GB): the RNA-seq data after upper-quartile (UQ) normalization, and batch effect correction using ComBat. According to our study this is in general the best processing workflow for this data. Values are log10 values after addition of a small pseudo count. 3) "annotation_data.txt" (297KB): a table with the sample ID, study ID, and assigned cell type or tissue of each RNA-seq sample in this dataset. 4) "cell_types_vs_index.txt" (1.2KB): a list of each cell type and tissue in this dataset, along with their sample counts.