Additional file 2 of Pervasiveness of HLA allele-specific expression loss across tumor types

Additional file 2. Additional tables from the results of the association between HLA-I ASE loss and microsatellite instability, nonsense and missense mutations. Table S1. TCGA case numbers broken down by microsatellite instability and HLA-I ASE loss status. Table S2. Association between HLA-I ASE loss and nonsense mutations (a), HLA-I missense mutations (b), contact residue nonsense mutations in HLA-I genes (c) and nonsense/missense B2M mutations (d).