Single-cell information extracted from IMC example data

This repository contains additional information related to IMC example data available at zenodo.org/record/5949116. The following files are available and are part of the IMC Data Analysis workflow gated_cells.zip: contains SpatialExperiment objects storing cells that were manually gated based on their expression values to derive ground truth cell phenotype labels. spe.rds: SpatialExperiment object containing the single-cell information (mean intensity per cell and per channel; cellular metadata; channel metadata) of the processed data. images.rds: CytoImageList object containing the spillover-corrected images. masks.rds: CytoImageList object containing the segmentation masks.本仓库包含与zenodo.org/record/5949116收录的成像质谱流式（Imaging Mass Cytometry，IMC）示例数据相关的补充信息。以下可用文件均属于IMC数据分析工作流的组成部分： gated_cells.zip：内含基于表达值手动门控以获取金标准细胞表型标签的细胞对应的SpatialExperiment（空间实验对象）对象。 spe.rds：存储处理后数据的单细胞信息（单细胞及单通道的平均荧光强度、细胞元数据、通道元数据）的SpatialExperiment对象。 images.rds：内含溢出校正后成像数据的CytoImageList（细胞图像列表对象）对象。 masks.rds：内含分割掩码的CytoImageList对象。