Additional file 6: of The molecular landscape of premenopausal breast cancer

The Cancer Genome Atlas (TCGA) Ingenuity pathway analysis (IPA) upstream regulators. Table S1., Table S2. Top upstream regulators detected by IPA using the union of differentially expressed genes in Agilent and RNA-Seq expression platforms in TCGA. Table S2. Top upstream regulators detected by IPA using the differentially expressed gene list from Agilent expression array. Four columns correspond to Ingenuity canonical pathway names, â log(p value), percentage of genes detected in this pathway, and molecules in this pathway. Table S3. Top upstream regulators detected by IPA using the differentially expressed gene list from RNA-Seq expression array. Four columns correspond to Ingenuity canonical pathway names, â log(p value), percentage of genes detected in this pathway, and molecules in this pathway. (XLS 177 kb)