inSPIRE-External-Utilities

NIAID Data Ecosystem2026-05-01 收录

蛋白质组学数据

FragPipe工具集成

数据链接：

https://figshare.com/articles/dataset/inSPIRE-External-Utilities/22189198 数据链接链接失效反馈

官方服务：

资源简介：

External Utilities used by inSPIRE. Note this includes script from the open source fragpipe tool. Source of this script https://github.com/Nesvilab/FragPipe

创建时间：

2023-02-28

Understanding Data Analysis Steps in Mass-Spectrometry-Based Proteomics Is Key to Transparent Reporting

蛋白质组学数据

科学工作流可重复性

Mass spectrometry (MS)-based proteomics data analysis is composed of many stages from quality control, data cleaning, and normalization to statistical and functional analysis, without forgetting multi

NIAID Data Ecosystem50

BP_Prior v2.9.1 (a.k.a. PERA)

蛋白质组学数据

信号网络分析

BioPAX (BP) Prior (also known as PERA) is a tool for people who work with proteomics data and want to conduct pathway-context aware analysis. Given a set of annotated protein states, (such as phosphor

NIAID Data Ecosystem30

Protein Inference Using PIA Workflows and PSI Standard File Formats

蛋白质组学数据

蛋白质推断

Proteomics using LC–MS/MS has become one of the main methods to analyze the proteins in biological samples in high-throughput. But the existing mass-spectrometry instruments are still limited with res

NIAID Data Ecosystem10

Additional file 4 of A comprehensive systematic review of CSF proteins and peptides that define Alzheimer’s disease

阿尔茨海默病生物标志物

蛋白质组学数据

Additional file 4: Table S4. Information regarding all peptides extracted from the proteomic studies. M.W. [Da]: Molecular weight obtained from each article. Theo. M.W. [Da]: theoretical molecular wei

Figshare2020-06-06 更新40

Training data for MaxQuant and Msstats TMT analysis in Galaxy

蛋白质组学数据

生物信息学

The files serve as input and intermediate results for a MaxQuant and MsstatsTMT training on lysine methyl transferase 9 knockdown and control cell proteomics (https://doi.org/10.1186/s12935-020-1141-2

Zenodo2021-08-12 更新10

inSPIRE-External-Utilities

资源简介：

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