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Calculated with Tassel for the 47,298 SNP markers evaluated in 96 potato genotypes. (TXT)
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2021-04-29
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Data from: Linkage disequilibrium and inversion-typing of the Drosophila melanogaster Genome Reference Panel
We calculated the linkage disequilibrium between all pairs of variants in the Drosophila Genome Reference Panel with minor allele count ≥5. We used r2 ≥ 0.5 as the cutoff for a highly correlated SNP.
DataONE2015-06-12 更新110
Patterns of linkage disequilibrium and long range hitchhiking in evolving experimental Drosophila melanogaster populations
Whole genome re-sequencing of experimental populations evolving under a specific selection regime has become a popular approach to determine genotype-phenotype maps and understand adaptation to new en
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LD (r2) between each pair of markers calculated using PLINK and split per chromosome.
(XLSX)
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MOESM4 of Comparison of allele frequencies of Plasmodium falciparum merozoite antigens in malaria infections sampled in different years in a Kenyan population
Additional file 4. Linkage disequilibrium (LD) analysis of all high frequency (>5%) SNPs in all 15 merozoite genes, except eba181 due to limited SNP data. The analysis was performed by conducting a
DataCite Commons2024-12-17 更新80
Multilocus linkage disequilibrium analysis of Vibrio vulnificus .
VO, observed variance of the number of loci at which two STs differ (K) [88]. VE, expected variance of K [88]. IA, index of association (IA = [VO/VE]-1) [88]. ISA, standardized index of association ([
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