RQUA tree datasets

File - Description ## Within MLanalysis ## *iqtree.log logfile from IQTREE analysis *IQtreefile.nex IQTREE output tree *seqs.fasta sequences unaligned *mafft.fasta sequences aligned with mafft *mafft.bmge_masked.fasta BMGE masked alignment ## Within TopologyTests ## *.log IQTREE logfile from site likelihood inference *.sitelh site likelihood file from IQTREE *_ContrainTrees_BootstrapTrees.tre ML cosntrain trees *_consel.catpv output from CONSEL ## FILES ## RQUA_full_datasets/MLanalysis rqua.iqtree.log rqua.IQtreefile.nex rqua.mafft.bmge_masked.fasta rqua.mafft.fasta rqua.seqs.fasta RQUA_full_datasets/TopologyTests RQUA_fulldataset_consel.catpv RQUA_fulldataset_ContrainTress_BootstrapTrees.tre RQUA_fulldataset_SiteLikelihoodGeneration.IQTREE.log RQUA_fulldataset_SiteLikelihoodGeneration.IQTREE.sitelh RQUA_GroupA_datasets/MLanalysis rqua.GroupA.IQtree.log rqua.GroupA.IQtree.treefile rqua.GroupA.mafft.bmge_masked.fasta rqua.GroupA.mafft.fasta rqua.GroupA.seqs.fasta RQUA_GroupA_datasets/TopologyTests RQUA_GroupA_consel.catpv RQUA_GroupA_ConstrainTrees.tre RQUA_GroupA_SiteLikelihoodGeneration.IQTREE.log RQUA_GroupA_SiteLikelihoodGeneration.IQTREE.sitelh RQUA_GroupB_datasets/MLanalysis rqua.GroupB.IQtree.log rqua.GroupB.IQtree.treefile rqua.GroupB.mafft.bmge_masked.fasta rqua.GroupB.mafft.fasta rqua.GroupB.seqs.fasta RQUA_GroupB_datasets/TopologyTests RQUA_GroupB_consel.catpv RQUA_GroupB_ConstrainTrees.tre RQUA_GroupB_SiteLikelihoodGeneration.IQTREE.log RQUA_GroupB_SiteLikelihoodGeneration.IQTREE.sitelh