Additional file 1 of Small-scale sequencing enables quality assessment of Ribo-Seq data: an example from Arabidopsis cell culture

Additional file 1: Table S1. Biotinylated rRNA depletion probes. Table S2. List of rRNA databases used with SortMeRNA for rRNA removal. Table S3. Arabidopsis rRNA fasta file added to the SortMeRNA database. Table S4. Mapping quality comparison between bowtie 2 and kallisto. Table S5. Library amplification primers. Figure S1. Gel images of the library construction procedure. Figure S2. The rRNA compositions of the libraries. Figure S3. Genome browser (IGB) view of a randomly selected region. Figure S4. Ribo-Seq QC analysis of T0-2 and T0-3 data. Figure S5. Meta-gene heatmap of T0-2 and T0-3 data. Figure S6. The RPF profiles of the two most abundant transcripts.